Supercomputer System

HP XC4000 Supercomputer System

HP ProLiant DL145 G2（AMD Opteron 2.6GHz, 256CPU, 640GB, 1331.2GFLOPS） MPI using

Hardware

Computing Node 1

  • Machine name: HP ProLiant DL145 G2
  • Node No.: 96
  • C P U : AMD Opteron (2.6GHz) x2, 96nodes 192CPU
  • Memory: Total 4GB, 96nodes 384GB

Computing Node 2

  • Machine name: HP ProLiant DL145 G2
  • Node No.: 32
  • C P U : AMD Opteron (2.6GHz) x2, 32nodes 64CPU
  • Memory: Total 8GB, 32nodes 276GB

Service Node (login)

  • Node No.: 4
  • Machine name: HP ProLiant DL385
  • C P U : AMD Opteron (2.6GHz) x2, 4nodes 8CPU
  • Memory: Total 8GB, 4nodes 32GB

Software

  • Cluster Softwre: XC System Software
    • Linux Virtual Software
    • SLURM
    • SystemImager
    • Pdsh
    • Nagios
    • SuperMon
  • Development Software
    • PGI Fortran C/C++
    • Intel Fortran C/C++
    • PathScale Fortran C/C++
    • J2SE(TM)Development Kit
  • MPI2:
    • HP MPI
  • Numeric data Library
    • FFTW, SPRNG, AMD ACML
    • NAG Parallel Computation Library
  • Debugging Tool:
    • PGI compiling program's debugger and Profiler
    • HP MPI's Profiler
    • GDB Debugger
    • pgrof Profiler
  • Batch Job :
    • LSF

Manual

Caution

Example for Intel fortran compiling using MPI

  1. Loading modules
    • Listing available modules
      module avail
    • Loading MPI andifort/9.0
      module load mpi
      module load ifort/9.0
    • Listing loaded modules
      module list
    • Unloading modules
      module unload　module-name
  2. Compiling
    mpif90 -o test test.f90
  3. Adding options -o -e for making error file when you execute bsub command
    bsub -q q8 -n 8 -o test.out -e test.err mpirun -srun ./test
  4. PATH
    Please delete path or manpath when you can't compile or see man. You can see man of loaded modules only.
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