List of Papers

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Jounal Papers, Letters, Conference Papers (published as special volume of a journal)

Iba, Y., Chikenji, G. and Kikuchi, M. 1998
Simulation of Lattice Polymers with Multi-Self-Overlap Ensemble
J. Phys. Soc. Japan, Vol.67, Oct. 1998, 3327-3330.

Iba, Y., Tokita, K. and Kikuchi, M. 1998
Design Equation: A Novel Approach to Heteropolymer Design
J. Phys. Soc. Japan, Vol.67, Nov. 1998, 3985-3990.

Iba, Y. 1999
Simulation of Spin Glass with Multi-System-Size Ensemble
J. Phys. Soc. Japan, Vol.68, Mar. 1999, 1057-1058.

Iba, Y. 1999
The Nishimori Line and Bayesian Statistics
Journal of Physics A 32 (1999) 3875-3888.

Chikenji,G., Kikuchi,M. and Iba,Y. 1999
Multi-Self-Overlap Ensemble for Protein folding:Ground state search and Thermodynamics
Physical Review Letters 83 (1999) 1886-1889.

Iba, Y. and Takahashi, H. 2005
Exploration of Multi-Dimensional Density of States by Multicanonical Monte Carlo Algorithm,
Progress of Theoretical Physics Supplement 157 345-348.

Suetani, H., Iba, Y., Aihara, K. 2006
Detecting generalized synchronization between chaotic signals: a kernel-based approach
Journal of Physics A: Mathematical and General, 39, 10723-10742.

Hukushima, K. and Iba, Y. 2008
A Monte Carlo Algorithm for Sampling Rare Events: Application to a Search for the Griffiths Singularity
Journal of Physics: Conference Series, 95, 012005.

Iba, Y. and Hukushima, K. 2008
Testing Error Correcting Codes by Multicanonical Sampling of Rare Events
J. Phys. Soc. Jpn. 77 103801.

Yanagita,T, and Iba, Y. 2009
Exploration of order in chaos using the replica exchange Monte Carlo method
Journal of Statistical Mechanics [Topical articles on SigmaPhi] P02043.

Nakae, K., Iba, Y., Tsubo, Y., Fukai, T., and Aoyagi, T. 2010
Bayesian estimation of phase response curves,
Neural Networks 23, 752-763.

Saito, N., Iba, Y., and Hukushima, K. 2010
Multicanonical sampling of rare events in random matrices,
Physical Review E, 82, 031142.

Iba, Y and Akaho, S. 2010
Gaussian process regression with measurement error,
IEICE Transactions on Information and Systems E93.D
[Special Section on Data Mining and Statistical Science] 2680-2689.

Saito, N. and Iba, Y. 2010
Probability of graphs with large spectral gap by multicanonical Monte Carlo,
Computer Physics Communications, in press.

Kitajima, A. and Iba, Y. 2010
Multicanonical sampling of rare trajectories in chaotic dynamical systems,
Computer Physics Communications, in press.

Proceedings

Iba, Y, Akutsu, Y. and Kaneko, K. 1987
Phase Transitions in 2-dimensional Stochastic Cellular Automata
Science on form (Sakura, 1985), Reidel, Dordrecht, 1987, 103-111.

Iba,Y. 1989
Bayesian Statistics and Statistical Mechanics,
Cooperative Dynamics in Complex Physical Systems ,
H.~Takayama, ed., Springer-Verlag, Berlin, 1989, 235-236.

Iba, Y. and Tanaka-Yamawaki, M. 1996
Statistical Analysis of Human Random Number Generators
Methodologies for the Conception, Design, and Application of Intelligent Systems, Proceedings of IIZUKA'96 , Vol.2, Yamakawa,~T. and Matsumoto,~G., eds., World Scientific, 1996, 467-472.

Iba,Y. 1998
Mean Field Approximation in Bayesian Variable Selection,
Proceedings of ICONIP'98 Vol.1,
eds. Usui,~S. and Omori,~T., Ohmsha, Tokyo and IOS Press, Burke VA USA, 1998, 530-533.

Iba,Y. and Hukushima,K. 2000
Identification of Metastable States in Finite Temperature Simulations: A Self-Organization Approach
Proceedings of ICCP5, Progress of Theoretical Physics Supplement No.138 462-463.

Tokita,K., Kikuchi,M. and Iba,Y. 2000
Dynamical Equation Approach for Protein Design
Proceedings of ICCP5, Progress of Theoretical Physics Supplement No.138 378--383.

Chikenji,G., Kikuchi,M. and Iba,Y. 2000
Multi-Selfoverlap-Ensemble Monte Carlo Method for Lattice Proteins and Heteropolymers
Proceedings of ICCP5, Progress of Theoretical Physics Supplement No.138 404-405.

Iba,Y. 2000
Microcanonical and Multicanonical Approaches to Bayesian Image Restoration
Proceedings of IBIS2000, pp.277-282.

Survey Papers (refereed)

Iba,Y. 2001
Population Monte Carlo algorithms
Transactions of the Japanese Society for Artificial Intelligence, Vol.16 No.2, pp.279-286
[original: Population-based Monte Carlo algorithms, Proceedings of IBIS2000, pp.245-250 (2000)].

Iba,Y. 2001
Extended Ensemble Monte Carlo
International Journal of Modern Physics, C12 (2001) pp.623-656