予測発見戦略研究センター データ同化グループ
Home Page : http://daweb.ism.ac.jp/~yoshidar/
| 1999 年 3 月 | 京都産業大学経済学部経済学科卒業 |
| 2001 年 3 月 | 京都産業大学大学院博士前期課程経済学研究科経済学専攻修了 |
| 2004 年 9 月 | 総合研究大学院大学博士後期課程複合科学研究科統計科学専攻修了 |
| 2004 年 10月 | 情報・システム研究機構 統計数理研究所 予測発見戦略センター 特別研究員 |
| 2005 年 4 月 | 東京大学科学技術振興調整費特任研究員 |
| 2005 年 8 月 | 東京大学科学技術振興調整費特任助手 |
| 2007 年 4 月 | 統計数理研究所モデリング研究系助教，予測発見戦略センター助教 |
"Mixture Models in Bayesian Computation and Mixed Factors Analysis"
(2)R.Yoshida, S.Imoto, T.Higuchi (2005) A penalized likelihood estimation on transcriptional module-based clustering, Lecture Note in Computer Science, 3482, Springer-Verlag, 389-401.
(3)R.Yoshida, T.Higuchi, S.Imoto (2005) Estimating time-dependent gene networks from time series DNA microarray data by dynamic linear model with Markov switching, Proc. IEEE 4th Computational Systems Bioinformatics, 289-298.
(4)R.Yoshida, T.Higuchi, S.Imoto, S.Miyano (2006) ArrayCluster: an analytic tool for clustering, data visualization and module finder on gene expression profiles, Bioinformatics, 22, 1538-1539.
(5)M.Nagasaki, R.Yamaguchi, R.Yoshida, S.Imoto, A.Doi, Y.Tamada, H.Matsuno, S.Miyano, T.Higuchi (2006) Genomic data assimilation for estimating Hybrid Functional Petri Net from time-course gene expression data, Genome Informatics, 17(1), 46-61.
(6)R.Yoshida, K. Numata, S.Imoto, M.Nagasaki, A.Doi, K.Ueno, S.Miyano (2006) A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST arrays, Genome Informatics, 17(1), 88-99.
(7)S.Tasaki, M.Nagasaki, M.Oyama, H.Hata, K.Ueno, R.Yoshida, T.Higuchi, S.Sugano, S.Miyano (2006) Modeling and estimation of dynamic EGFR pathway by data assimilation approach using time series proteomic data, Genome Informatics, 17(2), 226-238.
(8)R.Yamaguchi, R.Yoshida, S.Imoto, T.Higuchi, S.Miyano (2007) Finding module-based gene networks in time-course gene expression data with state space models, IEEE Signal Processing Magazine, 24(1), 37-46.
(9)P.K.Gupta, R.Yoshida, S.Imoto, R.Yamaguchi, S.Miyano (2007) Statistical absolute evaluation of gene ontology terms with gene expression data, Lecture Note in Bioinformatics, Springer-Verlag, 4463, 146-157.
(10)M.Henmi, R.Yoshida, S.Eguchi (2007) Importance sampling with the estimated sampler, Biometrika, 94(4), 985-991.
(11)R.Yamaguchi, M.Yamamoto, S.Imoto, M.Nagasaki, R.Yoshida, K.Tsuji, A.Ishige, H.Asou, K.Watanabe, S.Miyano (2007) Identification of activated transcription factors from microarray gene expression data of Kampo-medicine treated mice, Genome Informatics, 18, 119-129.
(12)O.Hirose, R.Yoshida, R.Yamaguchi, S.Imoto, T.Higuchi, S.Miyano (2007) Clustering with time course gene expression profiles and the mixture of state space models, Genome Informatics, 18, 258-266.
(13)R.Yoshida, K.Numata, S.Imoto, M.Nagasaki, A.Doi, K.Ueno, S.Miyano (2007) Computational genome-wide discovery of aberrant splice variations with exon expression profiles, Proc. IEEE 7th International Symposium on Bioinformatics & Bioengineering, 715-722.
(14)O.Hirose*, R.Yoshida*, S.Imoto, R.Yamaguchi, T.Higuchi, D.Stephen Charnock-Jones, C.Print, S.Miyano (2008) Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models, Bioinformatics, 23, 932-942.
(15)O.Hirose, R.Yoshida, R.Yamaguchi, S.Imoto, T.Higuchi, S.Miyano (2008) Analyzing time course gene expression data with biological and technical replicates to estimate gene networks by state space models, Proc. 2nd Asia International Conference on Modelling & Simulation, 940-946.
(16)R.Yamaguchi, S.Imoto, M.Yamauchi, M.Nagasaki, R.Yoshida, T.Shimamura, Y.Hatanaka, K.Ueno, T.Higuchi, N.Gotoh, S.Miyano (2008) Predicting differences in gene regulatory systems by state space models, Genome Informatics, 21, 101-113.
(17)K.Numata, R.Yoshida, M.Nagasaki, A.Saito, S.Imoto, S.Miyano (2008) ExonMiner: Web service for analysis of GeneChip exon array data, BMC bioinformatics, 9, 494.
(18)R.Yoshida, M.Nagasaki, R.Yamaguchi, S.Imoto, S.Miyano, T.Higuchi (2008) Bayesian learning of biological pathways on genomic data assimilation, Bioinformatics, 24(22), 2592-2601.
(19)R.Yoshida, T.Higuchi (2009) Graphical modeling of intercellular biochemical pathways and statistical inference, Journal of the Japan Statistical Society (Japanese issue) 38(2), 213-236.
(20)K.Nakamura, R.Yoshida, M.Nagasaki, S.Miyano, T.Higuchi (2009) Parameter estimation of in silico biological pathways with particle filtering towards a petascale computing, Pacific Symposium on Biocomputing, 227-238.
(21)K.Kojima, R.Yamaguchi, S.Imoto, M.Yamauchi, M.Nagasaki, R.Yoshida, T.Shimamura, K.Ueno, T.Higuchi, N.Gotoh, S.Miyano (2009) A state space representation of VAR models with sparse learning for dynamic gene networks, Genome Informatics, 22, 56-68.