予測発見戦略研究センター ゲノム解析グループ
| 1995 年 4 月 | 学術振興会 特別研究員 |
| 1997 年 4 月 | University of Oxford, Department of Zoology, Postdoctoral Research Scientist |
| 1999 年 6 月 | 統計数理研究所 COE研究員 |
| 2000 年 4 月 | 理化学研究所 ゲノム科学総合研究センター 研究員 |
| 2002 年 4 月 | 理化学研究所 ゲノム科学総合研究センター 上級研究員 |
| 2003 年 2 月 | 統計数理研究所 予測制御研究系 助教授 |
| 2003 年 4 月 | 総合研究大学院大学 先導科学研究科 生命体科学専攻 助教授(併任) |
| 2005 年 4 月 | 統計数理研究所 モデリング研究系助教授、予測発見戦略研究センター（兼務） |
| 2007 年 4 月 | 統計数理研究所 モデリング研究系准教授、予測発見戦略研究センター（兼務） | 2007 年 4 月 | 総合研究大学院大学 先導科学研究科 生命体科学専攻 准教授(併任) |
"Modeling of Molecular Evolution and Maximum Likelihood Inference of Molecular Phylogeny"
(2) Hasegawa, M., Cao, Y., Adachi, J., & Yano, T. (1992). Rodent polyphyly?, Nature, 355(6361), 595.
(3) Hasegawa, M., Hashimoto, T., Adachi, J., Iwabe, N., & Miyata, T. (1993). Early branchings in the evolution of eukaryotes: Ancient divergence of entamoeba that lacks mitochondria revealed by protein sequence data, Journal of Molecular Evolution, 36(4), 380-388.
(4) Adachi, J., Cao, Y., & Hasegawa, M. (1993). Tempo and mode of mitochondrial DNA evolution in vertebrates at the amino acid sequence level: Rapid evolution in warm-blooded vertebrates, Journal of Molecular Evolution, 36(3), 270-281.
(5) Hashimoto, T., Otaka, E., Adachi, J., Mizuta, K., & Hasegawa, M. (1993). The giant panda is closer to a bear, judged by α- and β-hemoglobin sequences, Journal of Molecular Evolution, 36(3), 282-289.
(6) Hashimoto, T., Nakamura, Y., Nakamura, F., Shirakura, T., Adachi, J., Goto, N., & Hasegawa, M. (1994). Protein phylogeny gives a robust estimation for early divergences of eukaryotes: Phylogenetic place of a mitochondria-lacking protozoan, giardia lamblia, Molecular Biology and Evolution, 11(1), 65-71.
(7) Cao, Y., Adachi, J., Janke, A., Paabo, S., & Hasegawa, M. (1994). Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: Instability of a tree based on a single gene, Journal of Molecular Evolution, 39(5), 519-527.
(8) Cao, Y., Adachi, J., Yano, T., & Hasegawa, M. (1994). Phylogenetic place of guinea pigs: No support of the rodent-polyphyly hypothesis from maximum-likelihood analyses of multiple protein sequences, Molecular Biology and Evolution, 11(4), 593-604.
(9) Shirakura, T., Hashimoto, T., Nakamura, Y., Kamaishi, T., Cao, Y., Adachi, J., Hasegawa, M., Yamamoto, A., & Goto, N. (1994). Phylogenetic place of a mitochondria-lacking protozoan, entamoeba histolytica, inferred from amino acid sequences of elongation factor 2, Japanese Journal of Genetics, 69(2), 119-135.
(10) Cao, Y., Adachi, J., & Hasegawa, M. (1994). Eutherian phylogeny as inferred from mitochondrial DNA sequence data, Japanese Journal of Genetics, 69(5), 455-472.
(11) Hashimoto, T., Nakamura, Y., Kamaishi, T., Nakamura, F., Adachi, J., Okamoto, K., & Hasegawa, M. (1995). Phylogenetic place of mitochondrion-lacking protozoan, giardia lamblia, inferred from amino acid sequences of elongation factor 2, Molecular Biology and Evolution, 12(5), 782-793.
(12) Adachi, J., & Hasegawa, M. (1995). Phylogeny of whales: Dependence of the inference on species sampling, Molecular Biology and Evolution, 12(1), 177-179.
(13) Hashimoto, T., Nakamura, Y., Kamaishi, T., Adachi, J., Nakamura, F., Okamoto, K., & Hasegawa, M. (1995). Phylogenetic place of kinetoplastid protozoa inferred from a protein phylogeny of elongation factor 1α, Molecular and Biochemical Parasitology, 70(1-2), 181-185.
(14) Adachi, J., & Hasegawa, M. (1995). Improved dating of the human/chimpanzee separation in the mitochondrial DNA tree: Heterogeneity among amino acid sites, Journal of Molecular Evolution, 40(6), 622-628.
(15) Adachi, J., & Hasegawa, M. (1996). Tempo and mode of synonymous substitutions in mitochondrial DNA of primates, Molecular Biology and Evolution, 13(1), 200-208.
(16) Nakamura, Y., Hashimoto, T., Kamaishi, T., Adachi, J., Nakamura, F., Okamoto, K., & Hasegawa, M. (1996). Phylogenetic position of kinetoplastid protozoa inferred from the protein phylogenies of elongation factors 1α and 2, Journal of Biochemistry, 119(1), 70-79.
(17) Hasegawa, M., & Adachi, J. (1996). Phylogenetic position of cetaceans relative to artiodactyls: Reanalysis of mitochondrial and nuclear sequences, Molecular Biology and Evolution, 13(5), 710-717.
(18) Adachi, J., & Hasegawa, M. (1996). Model of amino acid substitution in proteins encoded by mitochondrial DNA, Journal of Molecular Evolution, 42(4), 459-468.
(19) Adachi, J., & Hasegawa, M. (1996). Instability of quartet analyses of molecular sequence data by the maximum likelihood method: The Cetacea/Artiodactyla relationships, Molecular Phylogenetics and Evolution, 6(1), 72-76.
(20) Milinkovitch, M. C., Leduc, R. G., Adachi, J., Farnir, F., Georges, M., & Hasegawa, M. (1996). Effects of character weighting and species sampling on phylogeny reconstruction: A case study based on DNA sequence data in cetaceans, Genetics, 144(4), 1817-1833.
(21) Hasegawa, M., Adachi, J., & Milinkovitch, M. C. (1997). Novel phylogeny of whales supported by total molecular evidence, Journal of Molecular Evolution, 44(SUPPL. 1), S117-S120.
(22) Ohdachi, S., Masuda, R., Abe, H., Adachi, J., Dokuchaev, N. E., Haukisalmi, V., & Yoshida, M.C. (1997). Phylogeny of eurasian soricine shrews (insectivora, mammalia) inferred from the mitochondrial cytochrome b gene sequences, Zoological Science, 14(3), 527-532.
(23) Adachi, J., Waddell, P. J., Martin, W., & Hasegawa, M. (2000). Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA. Journal of Molecular Evolution, 50(4), 348-358.
(24) Kawai, J., and 95 people including Adachi, J. (2001). Functional annotation of a full-length mouse cDNA collection, Nature, 409(6821), 685-689.
(25) Kochiwa, H., Suzuki, R., Washio, T. et al. including Adachi, J. (2002). Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data, Genome Research, 12(8), 1286-1293.
(26) Hayashizaki, Y., Okazaki, Y., Furuno, M., Kasukawa, T., Adachi, J., and 86 people. (2002). Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs, Nature, 420(6915), 563-573.
(27) Furuno, M., Kasukawa, T., Saito, R., Adachi, J. et al. (2003). CDS annotation in full-length cDNA sequence, Genome Research, 13(6B), 1478-1487.
(28) Baldarelli, R. M., Hill, D. P., Blake, J. A., Adachi, J. et al. (2003). Connecting sequence and biology in the laboratory mouse, Genome Research, 13(6B), 1505-1519.
(29) Kikuchi, S., and 72 people including Adachi, J. (2003). Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice: The rice full-length cDNA consortium, Science, 301(5631), 376-379.