ISMLIB
Other Software
1. MOLPHY
MOLPHY: A Computer Program Package for Molecular Phylogenetics
- This is the MOLPHY (ProtML) distribution, version 2.3.
Copyright (c) 1992-1996, Jun Adachi & Masami Hasegawa.
All rights reserved.
MOLPHY is a program package for MOLecular PHYlogenetics.
ProtML is a main program in MOLPHY for inferring evolutionary trees from PROTein (amino acid) sequences by using the Maximum Likelihood method.
Programs (C language)
- ProtML: Maximum Likelihood Inference of Protein Phylogeny
- NucML: Maximum Likelihood Inference of Nucleic Acid Phylogeny
- ProtST: Basic Statistics of Protein Sequences
- NucST: Basic Statistics of Nucleic Acid Sequences
- NJdist: Neighbor Joining Phylogeny from Distance Matrix
Utilities (Perl)
- mollist: get identifiers list
- molrev: reverse DNA sequences
- molcat: concatenate sequences
- molcut: get partial sequences
- molmerge: merge sequences
- nuc2ptn: DNA -> Amino acid
- rminsdel: remove INS/DEL sites
- molcodon: get specified codon sites
- molinfo: get varied sites
- mol2mol: MOLPHY format beautifer
- inl2mol: Interleaved -> MOLPHY
- mol2inl: MOLPHY -> Interleaved
- mol2phy: MOLPHY -> Sequential
- phy2mol: Sequential -> MOLPHY
- must2mol: MUST -> MOLPHY
- etc.
However, MOLPHY has NOT been tested on VAX, IBM-PC, and Macintosh.
NETWORK DISTRIBUTION ONLY: The latest version of MOLPHY is always available by Repository in MOLPHY.
- [Download]
- MOLPHY
2. An AIC-based Tool for Data Visualization
An AIC-based Tool for Data Visualization
About "An AIC-based Tool for Data Visualization" (in Japanese)